PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0224
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 521aa    MW: 58201.5 Da    PI: 7.9968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0224genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10347391554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h   Er+RR+++N++f+ Lr+llP+      +K + +++L  + eY+ sL
  Gh_A05G0224 347 HMLSERKRREKLNESFDALRSLLPPG-----TKKDRVSVLASTREYLTSL 391
                  6778********************97.....79999**********9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-11344395No hitNo description
SuperFamilySSF474599.42E-15345410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13346409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8347391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDAVFLLDGA ARSGFLQFLM QSTGCTYICL WSYSSSLHQP NCLIGSDGWY NEQNSTQPGA  60
LVLFLEYRRL TFPLENNQGL VPGFAFRNYR PYIELGELEL QSRASHQTQR QFYRTAVFMG  120
CKSGEIELGS PNAVNLNMEM EMRTFFPEDF SRQSLVAVSE PTDPNNPSSS SSSLRSLATD  180
SPDSYLIFTV PNASRPQVPT GSETTPSLLQ AKPASSSMYD PHQQAMQQAL SEMRSNINLP  240
SLESENAAMT RAILAVLTSP SSSSSSTSQY HSQQSHNLPP SYQPNSKATA FKRYGSPLGT  300
PTTAAARASL RAQSMLKRAI LFYRRFNLVR SEQQPRRRAP TVHQLHHMLS ERKRREKLNE  360
SFDALRSLLP PGTKKDRVSV LASTREYLTS LKSQIMELNR QNQLLEAAQA SATSADEANG  420
SSNERLNIRI IPVPESTSEQ RIIELRVSVG GEVSIVDILI QLLQFLKLDR NISLMSTEAN  480
TRTAELGSIN HVNLRFRIEG DDWDESTFQE AVRRILADLA Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335354RRRAPTVHQLHHMLSERKRR
2350355ERKRRE
3351356RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440726.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A0D2UFH10.0A0A0D2UFH1_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-69bHLH family protein